![]() ![]() Noodles ( repo | docs | crates.io) - Pure Rust bioinformatics I/O libraries. Niffler ( repo) - Simple and transparent support for compressed files. Needletail ( repo | docs | crates.io) - Fast FASTX parsing and k-mer methods in Rust. Htsget-rs ( repo | docs | crates.io) - GA4GH’s htsget implementation. Here you can find all sorts of bioinformatics crates that were created by the Rust community:īio ( repo | docs | crates.io) - Implementations of many useful bioinformatics data structures and algorithms, including pattern matching, alignment, suffix arrays, BWT, FM-Index, and parsers for common file types.Ĭoitrees ( repo | docs | crates.io) - Cache oblivious interval tree implementation for very fast overlap queries of a static set of integer intervals, with genomic intervals in mind.ĭebruijn ( repo | docs | crates.io - De Bruijn graph construction & path compression libraries.įastq-rs ( repo | docs | crates.io) - A fast parser for FASTQ. The Rust bioinformatics ecosystem contains general, easy-to-use crates like bio, along with a plethora of crates for specific tasks. ![]() (but many projects are still work-in-progress)
0 Comments
Leave a Reply. |